SNP Profiles matching ICS 89

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AA	CG	CT	TT	AA	CC	GT	CC	TT	AA	AA	CC	GG
1._ICS_89	CT	AA	CG	CT	TT	AA	CC	GT	CC	TT	AA	AA	CC	GG
2._ICS_89	CT	AA	CG	CT	TT	AA	CC	GT	CC	TT	AA	AA	CC	GG
3._ICS_89	CT	AA	CG	CT	TT	AA	CC	GT	CC	TT	AA	AA	CC	GG
4._ICS_89	CT	AA	CG	CT	TT	AA	CC	GT	CC	TT	AA	AA	CC	GG
5._GC-08-066-1-88	CT	AA	CG	CT	TT	AA	CC	GT	CC	TT	AA	AA	CC	GG
6._GC-08-066-1-88	CT	AA	CG	CT	TT	AA	CC	GT	CC	TT	AA	AA	CC	GG
7._GC-08-066-1-88	CT	AA	CG	CT	TT	AA	CC	GT	CC	TT	AA	AA	CC	GG
8._GC-08-066-1-88	CT	AA	CG	CT	TT	AA	CC	GT	CC	TT	AA	AA	CC	GG
9._GC-08-066-1-88	CT	AA	CG	CT	TT	AA	CC	GT	CC	TT	AA	AA	CC	GG
10._ICS_89	CT	AA	GG	CT	TT	AA	CC	GT	CC	TT	AA	AA	CC	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	TT	CC	CC	GT	GG	CT	CC	CC	TT	CT	CC
1._ICS_89	TT	AA	GG	TT	CC	CC	GT	GG	CT	CC	CC	TT	CT	CC
2._ICS_89	TT	AA	GG	TT	CC	CC	GT	GG	CT	CC	CC	TT	CT	CC
3._ICS_89	TT	AA	GG	TT	CC	CC	GT	GG	CT	CC	CC	TT	CT	CC
4._ICS_89	TT	AA	GG	TT	CC	CC	GT	GG	CT	CC	CC	TT	CT	CC
5._GC-08-066-1-88	TT	AA	GG	TT	CC	CC	GT	GG	CT	CC	CC	TT	CT	CC
6._GC-08-066-1-88	TT	AA	GG	TT	CC	CC	GT	GG	CT	CC	CC	TT	CT	CC
7._GC-08-066-1-88	TT	AA	GG	TT	CC	CC	GT	GG	CT	CC	CC	TT	CT	CC
8._GC-08-066-1-88	TT	AA	GG	TT	CC	CC	GT	GG	CT	CC	CC	TT	CT	CC
9._GC-08-066-1-88	TT	AA	GG	TT	CC	CC	GT	GG	CT	CC	CC	TT	CT	CC
10._ICS_89	TT	AA	GG	TT	CC	CC	GT	GG	CT	CC	CC	TT	CT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	GG	AT	CT	AA	CC	AC	CT	GG	AC	AA	GG	X_X	X_X
1._ICS_89	GG	GG	AT	CT	AA	CC	AC	CT	GG	AC	AA	GG	X_X	X_X
2._ICS_89	GG	GG	AT	CT	AA	CC	AC	CT	GG	AC	AA	GG	X_X	X_X
3._ICS_89	GG	GG	AT	CT	AA	CC	AC	CT	GG	AC	AA	GG	X_X	X_X
4._ICS_89	GG	GG	AT	CT	AA	CC	AC	CT	GG	AC	AA	GG	X_X	X_X
5._GC-08-066-1-88	GG	GG	AT	CT	AA	CC	AC	CT	GG	AC	AA	GG	X_X	X_X
6._GC-08-066-1-88	GG	GG	AT	CT	AA	CC	AC	CT	GG	AC	AA	GG	X_X	X_X
7._GC-08-066-1-88	GG	GG	AT	CT	AA	CC	AC	CT	GG	AC	AA	GG	X_X	X_X
8._GC-08-066-1-88	GG	GG	AT	CT	AA	CC	AC	CT	GG	AC	AA	GG	X_X	X_X
9._GC-08-066-1-88	GG	GG	AT	CT	AA	CC	AC	CT	GG	AC	AA	GG	X_X	X_X
10._ICS_89	GG	GG	AT	CT	AA	_	AC	CT	GG	AC	AA	GG	X_X	X_X

Input profile: ICS_89

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Mars Center for Cocoa Science, Brazil

Location: 8188 3

Dapeng Zhang, 2016

1._ICS_89

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8188 7

Dapeng Zhang, 2016

2._ICS_89

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8188 6

Dapeng Zhang, 2016

3._ICS_89

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8188 5

Dapeng Zhang, 2016

4._ICS_89

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8188 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._ICS_89 GC-08-066-1-88

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._ICS_89 GC-08-066-1-88

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

7._ICS_89 GC-08-066-1-88

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._ICS_89 GC-08-066-1-88

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

9._ICS_89 GC-08-066-1-88

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

10._ICS_89

98.7 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block1

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25